A scalable, efficient, cross-platform (Linux/macOS) and easy-to-use workflow engine in pure Python.
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DailyDreaming Merge pull request #2521 from arostamianfar/fixtypo
Small typo fix: Replace 'insure' with 'ensure'.
Latest commit 6c24aaf Jan 31, 2019
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attic xrange. May 17, 2018
contrib/azure Don't reserve space for root on Mesos disks Apr 24, 2017
dashboard Specify region in prometheus. Nov 5, 2018
docker Modify status test to be less aggro. Nov 26, 2018
docs Small typo fix: Replace 'insure' with 'ensure'. Jan 31, 2019
src/toil Small typo fix: Replace 'insure' with 'ensure'. Jan 31, 2019
.gitignore Gitlab tests working with python3. Jan 30, 2019
.gitlab-ci.yml Update .gitlab-ci.yml Jan 29, 2019
.travis.yml Fix Travis builds on default Trusty infrastructure Dec 6, 2018
CODE_OF_CONDUCT.md Create CODE_OF_CONDUCT.md Sep 21, 2017
CONTRIBUTING.md Fix dead link in CONTRIBUTING.md Apr 2, 2017
LICENSE
Makefile Don't force all users to install pytest Jan 10, 2019
README.rst be specific about what "cross platform" means Nov 26, 2018
ROADMAP.md Adding question about dates Dec 13, 2017
jenkins.sh Short tests. Nov 2, 2018
run_tests.py Python 2/3 and some spelling corrections. Oct 10, 2018
setup.cfg Upgrade pytest so we can use ALLOW_BYTES Jun 22, 2018
setup.py Gitlab tests working with python3. Jan 30, 2019
version_template.py added a lot of `.decode('utf-8')` calls to ensure that `bytes` object… Nov 30, 2018

README.rst

ATTENTION: Toil has moved from http://www.oddjack.com/?certs=BD2KGenomics/toil to http://www.oddjack.com/?certs=DataBiosphere/toil as of July 5th, 2018.

Toil is a scalable, efficient, cross-platform (Linux & macOS) pipeline management system, written entirely in Python, and designed around the principles of functional programming.

  • Check the website for a description of Toil and its features.
  • Full documentation for the latest stable release can be found at Read the Docs.
  • See our occasional blog for tutorials.
  • Google Groups discussion forum and videochat invite list.
Join the chat at https://gitter.im/bd2k-genomics-toil/Lobby