Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Python
Updated May 24, 2018
Singularity: Application containers for Linux
A DSL for data-driven computational pipelines
Workflow Description Language - Specification and Implementations
Java
Updated May 11, 2018
rrtools: Tools for Writing Reproducible Research in R
R
Updated May 2, 2018
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a f…
Future Gadget Laboratory
HTML
Updated Mar 3, 2018
Everware is about re-useable science, it allows people to jump right in to your research code.
Python
Updated Nov 14, 2017
Package an R workspace and all dependencies as a Docker container
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructu…
Containerize R Markdown Documents for Continuous Reproducibility
R
Updated May 14, 2018
Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
Nextflow
Updated May 23, 2018
Future Gadget Machine
JavaScript
Updated Mar 22, 2018
🔬 Empirical CLI
JavaScript
Updated Jul 15, 2017
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3…
C++
Updated May 25, 2018
RNA-seq workflow using STAR and DESeq2
HTML
Updated May 22, 2018
Reproducible Science: what, why, how
RMarkdown
Updated Mar 5, 2018
unit-testing for a collection of jupyter notebooks using nbconvert
Python
Updated Apr 14, 2018
NOTE: This repo is archived. Please see
http://www.oddjack.com/?certs=benmarwick/rrtools for my current approach
R
Updated Jul 21, 2017
Source code for the CERN Analysis Preservation portal
Python
Updated May 25, 2018
List of Reproducible Audio Research Papers
Run C++ spatial analysis code in Node.js or a Web Browser
C++
Updated May 14, 2018
A presentation on best coding/data management practices based on my own experiences of scientific computing and data …
CSS
Updated Jun 2, 2017
Project directory generator R package
R
Updated May 23, 2018
The stack I use to make reproducible reports of my statistical analyses
R
Updated Jan 18, 2018
Electromagnetic methods in geophysics - open educational resources.
SEER, reimplemented in python 🐍🔮
Python
Updated May 25, 2018
Examples and demos for ReproZip
HTML
Updated Mar 19, 2018
🔬 Open, reproducible science using Make, RMarkdown and Pandoc
CSS
Updated Oct 9, 2014
A systematic/quantitative review of articles, which will provide a basis for identifying what has been done so far in…
TeX
Updated May 22, 2018