Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Python
Updated Feb 22, 2019
Singularity: Application containers for Linux
A DSL for data-driven computational pipelines
rrtools: Tools for Writing Reproducible Research in R
R
Updated Feb 8, 2019
Workflow Description Language - Specification and Implementations
Java
Updated Feb 19, 2019
Future Gadget Laboratory
HTML
Updated Mar 3, 2018
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a f…
Package an R workspace and all dependencies as a Docker container
Containerize R Markdown documents for continuous reproducibility
R
Updated Feb 10, 2019
Everware is about re-useable science, it allows people to jump right in to your research code.
Python
Updated Jun 23, 2018
Detect germline or somatic variants from normal or tumour/normal whole-genome or targeted sequencing
Nextflow
Updated Feb 20, 2019
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructu…
RNA-seq workflow using STAR and DESeq2
HTML
Updated Feb 15, 2019
dcmjs is a javascript cross-compile of dcmtk (dcmtk.org).
Future Gadget Machine
JavaScript
Updated Mar 22, 2018
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3…
C++
Updated Feb 22, 2019
🔬 Empirical CLI
JavaScript
Updated Jul 15, 2017
High performance spatial analysis in a Web Browser or Node.js
C++
Updated Feb 11, 2019
unit-testing for a collection of jupyter notebooks using nbconvert
Python
Updated Jan 24, 2019
List of Reproducible Audio Research Papers
Source code for the CERN Analysis Preservation portal
Python
Updated Feb 16, 2019
Reproducible Science: what, why, how
RMarkdown
Updated Mar 5, 2018
NOTE: This repo is archived. Please see
http://www.oddjack.com/?certs=benmarwick/rrtools for my current approach
R
Updated Jul 21, 2017
Electromagnetic methods in geophysics - open educational resources.
A presentation on best coding/data management practices based on my own experiences of scientific computing and data …
CSS
Updated Jun 2, 2017
Project directory generator R package
R
Updated Sep 10, 2018
The stack I use to make reproducible reports of my statistical analyses
R
Updated Jan 18, 2018
Short course on reproducible science: what, why, how
RMarkdown
Updated Feb 4, 2019
SEER, reimplemented in python 🐍🔮
Python
Updated Jan 15, 2019
Software Papers as Software Modules: Towards a Culture of Reusable Results
Jupyter Notebook
Updated Jun 28, 2018