Sacred is a tool to help you configure, organize, log and reproduce experiments developed at IDSIA.
Python
Updated Sep 12, 2018
Singularity: Application containers for Linux
A DSL for data-driven computational pipelines
Workflow Description Language - Specification and Implementations
Java
Updated Sep 20, 2018
rrtools: Tools for Writing Reproducible Research in R
R
Updated Jul 19, 2018
ReproZip is a tool that simplifies the process of creating reproducible experiments from command-line executions, a f…
Future Gadget Laboratory
HTML
Updated Mar 3, 2018
Package an R workspace and all dependencies as a Docker container
Everware is about re-useable science, it allows people to jump right in to your research code.
Python
Updated Jun 23, 2018
Containerize R Markdown Documents for Continuous Reproducibility
R
Updated Jul 31, 2018
VisTrails is an open-source data analysis and visualization tool. It provides a comprehensive provenance infrastructu…
Detect germline or somatic variants from normal or tumour/normal whole-genome sequencing data
Nextflow
Updated Sep 20, 2018
Future Gadget Machine
JavaScript
Updated Mar 22, 2018
RNA-seq workflow using STAR and DESeq2
HTML
Updated Sep 11, 2018
🔬 Empirical CLI
JavaScript
Updated Jul 15, 2017
Scipion is an image processing framework to obtain 3D models of macromolecular complexes using Electron Microscopy (3…
C++
Updated Sep 20, 2018
unit-testing for a collection of jupyter notebooks using nbconvert
Python
Updated Aug 28, 2018
Source code for the CERN Analysis Preservation portal
Python
Updated Sep 20, 2018
List of Reproducible Audio Research Papers
Reproducible Science: what, why, how
RMarkdown
Updated Mar 5, 2018
Run C++ spatial analysis code in Node.js or a Web Browser
C++
Updated Jul 31, 2018
NOTE: This repo is archived. Please see
http://www.oddjack.com/?certs=benmarwick/rrtools for my current approach
R
Updated Jul 21, 2017
Electromagnetic methods in geophysics - open educational resources.
Project directory generator R package
R
Updated Sep 10, 2018
A presentation on best coding/data management practices based on my own experiences of scientific computing and data …
CSS
Updated Jun 2, 2017
The stack I use to make reproducible reports of my statistical analyses
R
Updated Jan 18, 2018
SEER, reimplemented in python 🐍🔮
Python
Updated Sep 17, 2018
Software Papers as Software Modules: Towards a Culture of Reusable Results
Jupyter Notebook
Updated Jun 28, 2018
notebooks and tutorials on computation in geophysics
Jupyter Notebook
Updated Jul 12, 2018
Examples and demos for ReproZip
HTML
Updated May 31, 2018