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HyPhy: Hypothesis testing using Phylogenies
Advent of Code 2015 in Befunge, days 1–3
A collection of code in esoteric languages
Java bindings to the Sleuthkit open-source host forensics library/toolkit.
Tests of selection incorporating multinucleotide mutations
data for manuscript
Examples/patches etc created in response to HyPhy issues
Desktop application for HyPhy
Scripts and data for group publications
all my previous and current befunge projects will be here
A collection of problems solved in Befunge
Repository for manuscript "A comparison of one-rate and two-rate inference frameworks for site-specific dN/dS estimation" by SJS, SW, COW.
Book chapter for upcoming Springer book Computational Methods in Protein Evolution
Materials related to an article by Ralph Haygood, Olivier Fedrigo, and collaborators in 2007, particularly HyPhy Batch Language files