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HyPhy: Hypothesis testing using Phylogenies
Advent of Code 2015 in Befunge, days 1–3
A collection of code in esoteric languages
Java bindings to the Sleuthkit open-source host forensics library/toolkit.
Tests of selection incorporating multinucleotide mutations
Desktop application for HyPhy
data for manuscript
Examples/patches etc created in response to HyPhy issues
Scripts and data for group publications
all my previous and current befunge projects will be here
A collection of problems solved in Befunge
Repository for manuscript "A comparison of one-rate and two-rate inference frameworks for site-specific dN/dS estimation" by SJS, SW, COW.
Book chapter for upcoming Springer book Computational Methods in Protein Evolution
Materials related to an article by Ralph Haygood, Olivier Fedrigo, and collaborators in 2007, particularly HyPhy Batch Language files
HyPhy standalone analyses