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Large scale Blast Score Ratio (BSR) analysis
An Automated Phylogenomic Inference Pipeline for Bacterial and Archaeal Sequences.
Pep8 example codes for UQAM-INF2170
ML based prediction of immunogenic neoantigens for immunotherapy
Automated classification of Translated Genomics Element
Pipeline for generate Ks plots of transcriptome data.
Trinity RNA-Seq workshop in Krumlov 2018
The one where we reconstruct genomes from hypersaline mat metagenomes
Trinity rna-seq workshop at the Ragon Institute, Sept. 2017
A SLURM tool for performing parallel BLAST searches
Training Manual for my Basic Introduction to Bioinformatics
simple calculator, pep9
Bipartite matching generalizations for peptide identification in tandem mass spectrometry
rnaseq workshop w/ EMBO in Sept 2016, based on the Krumlov 2016 materials
2016-2018 geoduck eelgrass OA proteomics DNR project. Scripts and data files for reproducibility related to analysis, paper.
Coursework from CSC 106 (Spring 2016) at UVic.