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See what the GitHub community is most excited about today.

  1. Workflows for processing high-throughput sequencing data for variant discovery with GATK4 and related tools

    wdl 55 25 Built by @bshifaw @vdauwera @romagnolid
  2. Workflows for germline short variant discovery with GATK4

    wdl 40 23 Built by @bshifaw @vdauwera @ruchim @indraniel @TMiguelT
  3. Workflows for somatic short variant discovery with GATK4

    wdl 33 14 Built by @bshifaw @vdauwera @zyxue
  4. Workflows used in production at Broad for germline short variant discovery in WGS data

    wdl 28 9 Built by @bshifaw @vdauwera
  5. Workflows used for germline short variant discovery in WGS data

    wdl 25 13 Built by @bshifaw
  6. Workflows for processing RNA data for germline short variant discovery with GATK (v3+v4) and related tools

    wdl 23 11 Built by @ruchim @bshifaw
  7. Workflows for somatic copy number variant discovery with GATK4

    wdl 18 8 Built by @bshifaw @vdauwera
  8. Secondary analysis pipelines

    wdl 17 10 Built by @ambrosejcarr @jishuxu @rexwangcc @mckinsel @dshiga
  9. Pipeline for structural variation detection in cohorts

    wdl 15 6 Built by @cc2qe @ernfrid
  10. a place for topmed workflows

    wdl 7 14 Built by @wshands @mjkrause @DailyDreaming @vlada3292 @yilinxu
  11. Workflows for converting between sequence data formats

    wdl 7 1 Built by @vdauwera @bshifaw
  12. A collection of reusable WDL tasks. Category:Other

    wdl 5 4 Built by @rhpvorderman @DavyCats @ffinfo @johnmous @papanikos
  13. wdl 4 4 Built by @aprabhak2 @psfoley @shivagopalan
  14. bioinformatics pipelines

    wdl 4 2 Built by @antonkulaga
  15. WDL workflow for population variant calling using htsget, DeepVariant, and GLnexus

    wdl 3 4 Built by @mlin
  16. Workflows for processing and variant discovery with GATK (v3+v4) optimized by Intel for on-premises infrastructure

    wdl 3 4 Built by @aprabhak2
  17. Miscellaneous workflows optimized by Intel to be fast-running

    wdl 3 Built by @aprabhak2 @knoblett
  18. Klarman Cell Observatory tools, workflows, and spells

    wdl 3 1 Built by @joshua-gould @bli25broad
  19. HiC uniform processing pipeline

    wdl 3 3 Built by @gabdank @p-sud @anacis @ottojolanki
  20. WDL for the ChIPseq pipeline

    wdl 2 Built by @egor-broad @dinvlad
  21. wdl 2 4 Built by @bshifaw
  22. Improving deep learning variant calling methods for BGI-SEQ

    wdl 2 Built by @cschin @AndrewCarroll @DCGenomics @pichuan
  23. development location for a wdl based germline pipeline with scatter gather parallelization

    wdl 2 1 Built by @oskarvid
  24. A BioWDL pipeline for processing RNA-seq data, starting with FASTQ files to produce expression measures and VCFs. Category:Multi-Sample

    wdl 2 Built by @rhpvorderman @DavyCats @ffinfo
  25. UofA BioWDL genomic workflows

    wdl 2 Built by @jimmybgammyknee
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